Before I started writing the story, I was creating all of my ideas on a spreadsheet that I will update to keep track of everything. Unfortunately, as I was writing chapter two, I found myself referencing some of those ideas without ever explaining them in the story. I am fixing this as I realize it but in case I miss any and so that others can have a better understanding of what is happening "behind the scene", I have moved most of the spreadsheet to a google doc. I will try to keep this updated and add more whenever I think of some or when the info will no longer cause any major spoilers.
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https://docs.google.com/spreadsheets/d/1wdfxgtuslizx3-s4In5RzpH0secUw3Hqu2nor0bb2Mw
I have also decided to follow GruntLordRyan's example and so there is a Pictures tab on the spreadsheet that will have any pictures that I feel illustrate what I am writing about.